PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021507.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 643aa    MW: 70387.1 Da    PI: 6.8478
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021507.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.77.6e-1062726422374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  ++ L+e+A+a+s+g+ e+a ++L+r++ +  a+p+ ++ qRl  +++ AL++r++     + +  p  e      +e++ +++ ++e+sP++++++++
  Pbr021507.1 272 KQSLMEAATAISDGKSEAAMEILTRMNSTqvANPRPSSEQRLLEFMALALKSRVNP----IDNPPPIAELF---RQEHTGSTQSLYELSPCFRLGFMA 362
                  578***********************9988799999*******************9....55544555444...8999999***************** PP

         GRAS  98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  aN aIlea+ ++    ++vH+iDfdi+qG+Q++ L++aL +R++  p  ++iT+v++  +g +e+l+ ++++L + A++lgv++efnv v++++ dl+
  Pbr021507.1 363 ANLAILEATMTDqsatSKVHVIDFDIGQGGQYVLLFHALVARQNVRPaVVKITTVAD--NGGEERLRMVHQKLIQDAQRLGVRLEFNV-VSQKIGDLN 457
                  ********9988778899************************9655549********..77**************************9.7******** PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea++pre+ er+kvE++
  Pbr021507.1 458 RESLGCEPDEPIAVNFAFKLYSMPDESVSMDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMARVNECCAYYGALLESIEATVPRENPERVKVEEA 555
                  ************************************************************************************************** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  p++ +++++ k  l   +  +  ++v+ee+g +++gW +r+L+++SaWr
  Pbr021507.1 556 -LSRKVANSVACEGRDRVERCEVFGKWRARMGMAGFELRPMGPNMTESLKNRLGSGNrvNSAFTVKEENGGVCFGWISRTLTVASAWR 642
                  .*************************************************999877765566*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.893245620IPR005202Transcription factor GRAS
PfamPF035142.6E-103272642IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MQSGGYNGGR GSGVPDFYPN GRSISIAAAM NGHNPSQNNP FHRSQLPGLF LDPTASQIAR  60
QTQFQPQTQN PAAGLIGKRT LAEFQAQQQN HYNPHQNPSQ NLYLRSLKAR TFQHSSPISP  120
LSPIDFSSGS SLSGSESSFS STSILPHQRF GLPMLQQLRP QPINQPAPQA MSYVNNLVPN  180
NPVQTRGVDS EKMFSNRLQE LEKQLLDDND EDDEGDAVSV ITKTNSEWSE TIQNLMGTAA  240
PSQNQKPVSP SPTSSSSSSS SVASPATSTC SKQSLMEAAT AISDGKSEAA MEILTRMNST  300
QVANPRPSSE QRLLEFMALA LKSRVNPIDN PPPIAELFRQ EHTGSTQSLY ELSPCFRLGF  360
MAANLAILEA TMTDQSATSK VHVIDFDIGQ GGQYVLLFHA LVARQNVRPA VVKITTVADN  420
GGEERLRMVH QKLIQDAQRL GVRLEFNVVS QKIGDLNRES LGCEPDEPIA VNFAFKLYSM  480
PDESVSMDNP RDELLRRVKG LAPRVVTLVE QELNTNTAPF MARVNECCAY YGALLESIEA  540
TVPRENPERV KVEEALSRKV ANSVACEGRD RVERCEVFGK WRARMGMAGF ELRPMGPNMT  600
ESLKNRLGSG NRVNSAFTVK EENGGVCFGW ISRTLTVASA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-412736426375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377540.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-179SCL8_ARATH; Scarecrow-like protein 8
TrEMBLD9ZJB80.0D9ZJB8_MALDO; SCL domain class transcription factor
STRINGVIT_16s0050g00950.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-165SCARECROW-like 8